gen_profile

matrix of spectrum quantification values, one row per spectrum and
one column per channel

method to use to &quot;roll up&quot; spectrum values to protein level

method

method used to determine ratio denominator, passed as
the &quot;method&quot; argument to <code>abs_to_ratio</code>

method.denom

<code>gen_profile</code> takes a matrix of spectrum channel
quantification values belonging to a protein and &quot;rolls them up&quot; into a
vector of protein-level relative quantification values.

internal

Software to aid in modeling and analyzing mass-spectrometry-based
proteome melting data. Quantitative data is imported and normalized and
thermal behavior is modeled at the protein level. Methods exist for
normalization, modeling, visualization, and export of results. For a
general introduction to MS-based thermal profiling, see Savitski et al.
(2014) <doi:10.1126/science.1255784>.

gen_profile: Generate protein ratio profile from spectrum quantification matrix.

Description

Usage

Arguments

Value

Details