mstherm (version 0.4.7)

plot.MSThermResult: Plot MSThermResult object.

Description

Generate a denaturation plot for an modeled protein/group.

Usage

# S3 method for MSThermResult
plot(x, table = T, col, CI.points = T, CI.Tm = T,
  ...)

Arguments

x

An MSThermResult object

table

(T/f) include table of per-replicate parameters

col

array of colors used to plot samples

CI.points

(T/F) plot temperature point confidence intervals

CI.Tm

(T/F) plot Tm confidence intervals

...

other parameters passed through to plot()

Value

Nothing

Examples

control <- system.file("extdata", "demo_project/control.tsv", package="mstherm")
annots  <- system.file("extdata", "demo_project/annots.tsv",  package="mstherm")
expt    <- MSThermExperiment(control, annotations=annots)
expt    <- normalize_to_std(expt, "cRAP_ALBU_BOVIN", plot=FALSE)
res     <- model_experiment(expt, bootstrap=FALSE, np=2)

# plot single MSThermResult
plot(res$P38707)

# plot all proteins (e.g. to pdf device, one-per-page)
plot(res)