simPower

An internal function of binomPower, which actually calculates the p value.

Code to support a systems biology research program from inception through publication.  The methods focus on dimension reduction approaches to detect patterns in complex, multivariate experimental data and places an emphasis on informative visualizations.  The goal for this project is to create a package that will evolve over time, thereby remaining relevant and reflective of current methods and techniques.  As a result, we encourage suggested additions to the package, both methodological and graphical.

Samuel V Scarpino

multiDimBio

Multivariate Analysis and Visualization for Biological Data

simPower function

<dl> <dt>ndads</dt>
<dd>a (non-empty) numeric value indicating the number of dads.</dd> <dt>mm</dt>
<dd>a (non-empty) numeric value indicating the mean number of offspring per dad per bin (normal dist). mm must be less than vv.</dd> <dt>vv</dt>
<dd>a (non-empty) numeric value indicating the variance in offspring per dad per bin (normal dist). vv must be great than mm.</dd> <dt>tau2</dt>
<dd>a (non-empty) numeric value indicating the dad effect (narrow-sense heritability ~ tau2/(tau2+(pi/sqrt(3))^2)).</dd> <dt>nperms</dt>
<dd>a (non-empty) numeric value indicating the number of bootstrap permutations to use for caluclating a p value.</dd> <dt>nbins</dt>
<dd>a (non-empty) numeric value indicating the number of bins, data are pooled before analysis.</dd></dl>

Arguments

An internal function of binomPower, which actually calculates the p value — simPower

<dl>

 <dt>ndads</dt>
<dd>a (non-empty) numeric value indicating the number of dads.</dd>

 <dt>mm</dt>
<dd>a (non-empty) numeric value indicating the mean number of offspring per dad per bin (normal dist). mm must be less than vv.</dd>

 <dt>vv</dt>
<dd>a (non-empty) numeric value indicating the variance in offspring per dad per bin (normal dist). vv must be great than mm.</dd>

 <dt>tau2</dt>
<dd>a (non-empty) numeric value indicating the dad effect (narrow-sense heritability ~ tau2/(tau2+(pi/sqrt(3))^2)).</dd>

 <dt>nperms</dt>
<dd>a (non-empty) numeric value indicating the number of bootstrap permutations to use for caluclating a p value.</dd>

 <dt>nbins</dt>
<dd>a (non-empty) numeric value indicating the number of bins, data are pooled before analysis.</dd>

</dl>

simPower: An internal function of binomPower, which actually calculates the p value

Description

Usage

Value

Arguments

Examples