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multiblock

Installation

# Install release version from CRAN  
install.packages("multiblock")  
# Install development version from GitHub  
devtools::install_github("khliland/multiblock")

Multiblock book

This package contains a large variety of the methods described in Age K. Smilde, Tormod Næs and Kristian Hovde Liland's book:

Multiblock Data Fusion in Statistics and Machine Learning
- Applications in the Natural and Life Sciences .

Submitted to Wiley September 2021 for publication.

Contents

  • Functions and vignettes organised into:
    • data handling
    • basic methods
    • unsupervised methods
    • ASCA
    • supervised methods
    • methods for complex structures
  • A selection of datasets
  • Common framework and plotting routines

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Version

Install

install.packages('multiblock')

Monthly Downloads

427

Version

0.8.0

License

GPL (>= 2)

Issues

Pull Requests

Stars

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Maintainer

Kristian Hovde Liland

Last Published

September 21st, 2021

Functions in multiblock (0.8.0)

basic

Single- and Two-Block Methods
compnames

Vector of component names
candies

Sensory assessment of candies.
asca_results

ASCA Result Methods
complex

Methods With Complex Linkage
SO_TDI

Total, direct, indirect and additional effects in SO-PLS-PM.
asca_plots

ASCA Result Methods
cca

Canonical Correlation Analysis - CCA
block.data.frame

Block-wise indexable data.frame
asca

Analysis of Variance Simultaneous Component Analysis - ASCA
explvar

Explained predictor variance
jive

Joint and Individual Variation Explained - JIVE
ifa

Inter-battery Factor Analysis - IFA
disco

Distinctive and Common Components with SCA - DISCO
dummycode

Dummy-coding of a single vector
lplsData

L-PLS data simulation for exo-type analysis
lpls

L-PLS regression
mfa

Multiple Factor Analysis - MFA
hogsvd

Higher Order Generalized SVD - HOGSVD
multiblock

multiblock
hpca

Hierarchical Principal component analysis - HPCA
gsvd

Generalised Singular Value Decomposition - GSVD
mcolors

Colour palette generation from matrix of RGB values
gca

Generalized Canonical Analysis - GCA
mcoa

Multiple Co-Inertia Analysis - MCOA
gpa

Generalized Procrustes Analysis - GPA
lpls_results

Result functions for L-PLS objects (lpls)
rosa_plots

Plotting functions for ROSA models
pcagca

PCA-GCA
pca

Principal Component Analysis - PCA
popls

Parallel and Orthogonalised Partial Least Squares - PO-PLS
mbpls

Multiblock Partial Least Squares - MB-PLS
unique_combos

Unique combinations of blocks
potato

Sensory, rheological, chemical and spectroscopic analysis of potatoes.
mbrda

Multiblock Redundancy Analysis - mbRDA
unsupervised

Unsupervised Multiblock Methods
supervised

Supervised Multiblock Methods
statis

Structuration des Tableaux <U+00E0> Trois Indices de la Statistique - STATIS
reexports

Objects exported from other packages
rosa

Response Oriented Sequential Alternation - ROSA
maage

M<U+00E5>ge plot
sopls

Sequential and Orthogonalized PLS (SO-PLS)
smbpls

Sparse Multiblock Partial Least Squares - sMB-PLS
wine

Wines of Val de Loire
rosa_results

Result functions for ROSA models
sopls_results

Result functions for SO-PLS models
sopls_plots

Scores, loadings and plots for sopls objects
multiblock_results

Result Functions for Multiblock Objects
simulated

Data simulated to have certain characteristics.
multiblock_plots

Plot Functions for Multiblock Objects
sca

Simultaneous Component Analysis - SCA