multibridge (version 1.0.0)

journals: Prevalence of Statistical Reporting Errors

Description

This data set, "journals" provides a summary of statistical reporting errors (i.e., inconsistencies between reported test statistic and reported p-value) of 16,695 research articles reporting results from null hypothesis significance testing (NHST). The selected articles were published in eight major journals in psychology between 1985 to 2013:

• Developmental Psychology (DP)

• Frontiers in Psychology (FP)

• Journal of Applied Psychology (JAP)

• Journal of Consulting and Clinical Psychology (JCCP)

• Journal of Experimental Psychology: General (JEPG)

• Journal of Personality and Social Psychology (JPSP)

• Public Library of Science (PLoS)

• Psychological Science (PS)

In total, Nuijten et al. (2016) recomputed 258,105 p-values with the R software package statcheck which extracts statistics from articles and recomputes the p-values. The anonymized dataset and the data documentation was openly available on the Open Science Framwework (https://osf.io/d3ukb/; https://osf.io/c6ap2/).

Usage

data(journals)

Format

A data.frame with 8 rows and 14 variables:

Variable Name	Description
journal	The journal name a research article was published in.
articles_downloaded	The number of articles downloaded per journal.
articles_with_NHST	The number of articles with NHST results.
perc_articles_with_NHST	The percentage of all downloaded articles that had NHST results.
nr_NHST	The total number of NHST results.
mean_nr_NHST_per_article_with_NHST	The mean number of NHST results per article that had at least one NHST result.
mean_nr_NHST_per_article_all_included	The mean number of NHST results in all downloaded articles.
errors	The total number of errors.
dec_errors	The total number of decision errors (i.e., an error that may have changed the statistical conclusion of the result).
perc_errors	The percentage of all results that was an error.
perc_dec_errors	The percentage of all results that was a decision error.
perc_articles_with_errors	The percentage of all articles that had at least one error.
perc_articles_with_dec_errors	The percentage of all articles that had at least one error.
APAfactor	APA factor: number of detected NHST results / total number of detected p values.

References

nuijten2016prevalencemultibridge

Examples

# NOT RUN {
data(journals)
# Prior specification 
# We assign a uniform Beta distribution on each binomial probability
a <- rep(1, 8)  
b <- rep(1, 8)  

x <- journals$errors 
n  <- journals$nr_NHST
factor_levels <- levels(journals$journal)

# restricted hypothesis
Hr1 <- c('JAP , PS , JCCP , PLOS , DP , FP , JEPG < JPSP')
out <- binom_bf_informed(x=x, n=n, Hr=Hr1, a=a, b=b, 
factor_levels=factor_levels, niter = 2e3)

summary(out)
# }