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multic (version 0.3.2)

Quantitative linkage analysis tools using the variance components approach

Description

Calculate the polygenic and major gene models for quantitative trait linkage analysis using variance components approach. The 0.2.2 release includes bug fixes that allow multic to run properly on 64-bit systems. The 0.3.0 release includes a fully implemented sw2mloci function. Note to Splus users: sw2mloci requires Splus 8 or greater.

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Install

install.packages('multic')

Monthly Downloads

33

Version

0.3.2

License

GPL (>= 2) | file LICENSE

Maintainer

Pat Votruba

Last Published

October 29th, 2012

Functions in multic (0.3.2)

addGE

Assess combinations of univariate multic objects
multic

Create a multic object
t.rank

Empirical Normal Quantile transformation
multic.object

a multic object
multic.control

Set control parameters for multic
print.multic

Use print() on a multic object
subsets

Choose Sets Of Size k From The n-Elements Of a Vector
expand.data

Create a "bootstrapped" version of a dataset to be used in multic.
plot.family.lods

Plot family contribution to peak LOD
expand.multic

Create "bootstrapped" versions of mloci.out and share.out for multic
solar2mloci

Convert a directory of SOLAR-formatted ibd and/or mibd files into a multic-formatted mloci.out
sw2mloci

Convert SimWalk IBD files into a single mloci.out.
phi2share

Convert a SOLAR-formatted phi2 file into a multic-formatted share.out file.
solar2multic

Convert SOLAR-formatted output into multic-formatted mloci.out and share.out
non.user.level.objects

This function is not intended for user-level use.
plot.multic

Plot a multic object