scPath

is cells x genes matrix from an scRNAseq experiment. Could be non-UMI or UMI counts.

datamat

specifies whether the species is mouse ("Mm"), human ("Hs) or C. elegans ("Ce").

orgsm

This function takes an scRNAseq counts matrix as an input (cells in rows x genes in cols) and outputs a list of cells x pathway matrices

We introduce a nonparametric, graphical test based on optimal matching for assessing whether multiple unknown multivariate probability distributions are equal. This method is consistent, and does not make any distributional assumptions on the data. Our procedure combines data that belong to different classes or groups to create a graph on the pooled data, and then utilizes the number of edges connecting data points from different classes to examine equality of distributions among the classes. The functions available through this package implement the work described here: <arXiv:1906.04776>.

scPath: This function takes an scRNAseq counts matrix as an input (cells in rows x genes in cols) and outputs a list of cells x pathway matrices

Description

Usage

Arguments

Value