create_substitution

Constructor function for <code>substitution</code> class.

Implement Bayesian Multilevel Modelling for compositional data
in a multilevel framework. Compute multilevel compositional data and
Isometric log ratio (ILR) at between and within-person levels,
fit Bayesian multilevel models for compositional predictors and outcomes,
and run post-hoc analyses such as isotemporal substitution models.
References:
Le, Stanford, Dumuid, and Wiley (2024) <doi:10.48550/arXiv.2405.03985>,
Le, Dumuid, Stanford, and Wiley (2024) <doi:10.48550/arXiv.2411.12407>.

Flora Le

multilevelcoda

Estimate Bayesian Multilevel Models for Compositional Data

Joshua F. Wiley

create_substitution function

<dl><dt>between_simple_sub</dt>
<dd>A list of results from <code>bsub</code> or <code>NULL</code></dd>
<dt>within_simple_sub</dt>
<dd>A list of results from <code>wsub</code> or <code>NULL</code></dd>
<dt>simple_sub</dt>
<dd>A list of results from <code>sub</code> or <code>NULL</code></dd>
<dt>between_avg_sub</dt>
<dd>A list of results from <code>bsubmargins</code> or <code>NULL</code></dd>
<dt>within_avg_sub</dt>
<dd>A list of results from <code>wsubmargins</code> or <code>NULL</code></dd>
<dt>avg_sub</dt>
<dd>A list of results from <code>submargins</code> or <code>NULL</code></dd>
<dt>delta</dt>
<dd>A numeric vector of the amount of substitution</dd>
<dt>ref</dt>
<dd>A character value specifying the reference grid</dd>
<dt>level</dt>
<dd>A character value specifying the level of substitution</dd>
<dt>weight</dt>
<dd>The weight to use in calculation of the reference composition</dd>
<dt>parts</dt>
<dd>The parts of the composition</dd>
<dt>summary</dt>
<dd>A logical value specifying whether to summarize the results</dd></dl>

Arguments

Constructor function for substitution class. — create_substitution

<dl>

<dt>between_simple_sub</dt>
<dd>A list of results from <code>bsub</code> or <code>NULL</code></dd>


<dt>within_simple_sub</dt>
<dd>A list of results from <code>wsub</code> or <code>NULL</code></dd>


<dt>simple_sub</dt>
<dd>A list of results from <code>sub</code> or <code>NULL</code></dd>


<dt>between_avg_sub</dt>
<dd>A list of results from <code>bsubmargins</code> or <code>NULL</code></dd>


<dt>within_avg_sub</dt>
<dd>A list of results from <code>wsubmargins</code> or <code>NULL</code></dd>


<dt>avg_sub</dt>
<dd>A list of results from <code>submargins</code> or <code>NULL</code></dd>


<dt>delta</dt>
<dd>A numeric vector of the amount of substitution</dd>


<dt>ref</dt>
<dd>A character value specifying the reference grid</dd>


<dt>level</dt>
<dd>A character value specifying the level of substitution</dd>


<dt>weight</dt>
<dd>The weight to use in calculation of the reference composition</dd>


<dt>parts</dt>
<dd>The parts of the composition</dd>


<dt>summary</dt>
<dd>A logical value specifying whether to summarize the results</dd>

</dl>

create_substitution: Constructor function for `substitution` class.

Description

Usage

Value

Arguments

See Also