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multimark

R package for capture-recapture analysis with multiple non-invasive marks

Installation instructions

CRAN release

The package is available at . To install it:

install.packages("multimark")

Install from Github

To install the latest (stable) version of the package from Github:

library(remotes)
install_github("bmcclintock/multimark")

To install the latest (unstable) version of the package from Github:

library(remotes)
install_github("bmcclintock/multimark@develop")

References

McClintock, B.T. (2015) multimark: an R package for analysis of capture–recapture data consisting of multiple “noninvasive” marks. Ecology and Evolution, 5(21), 4920-4931.

Maronde, L., McClintock, B.T., Breitenmoser, U., Zimmermann, F. (2020) Spatial capture–recapture with multiple noninvasive marks: An application to camera-trapping data of the European wildcat (Felis silvestris) using R package multimark. Ecology and Evolution, 10(24), 13968–13979.

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Version

Install

install.packages('multimark')

Monthly Downloads

336

Version

2.1.5

License

GPL-2

Maintainer

Brett T McClintock

Last Published

October 18th, 2022

Functions in multimark (2.1.5)

Fit open population survival models for ``traditional'' capture-mark-recapture data consisting of a single mark type

Bobcat spatial capture-recapture data

getdensityClosedSCR

Calculate population density estimates

Calculate posterior capture and survival probabilities

getprobsClosedSCR

Calculate posterior capture and recapture probabilities

Fit closed population abundance models for ``traditional'' capture-mark-recapture data consisting of a single mark type

Calculate posterior capture and recapture probabilities

Fit open population survival models for capture-mark-recapture data consisting of multiple non-invasive marks

Fit spatial population abundance models for ``traditional'' capture-mark-recapture data consisting of a single mark type

multimarkSCRsetup-class

Class "multimarkSCRsetup"

Generate model inputs for fitting 'multimark' models

multimarkClosedSCR

Fit spatially-explicit population abundance models for capture-mark-recapture data consisting of multiple non-invasive marks

multimodelClosed

Multimodel inference for 'multimark' closed population abundance models

Generate model inputs for fitting spatial 'multimark' models

Multimodel inference for 'multimark' open population survival models

multimarkClosed

Fit closed population abundance models for capture-mark-recapture data consisting of multiple non-invasive marks

multimarksetup-class

Class "multimarksetup"

multimodelClosedSCR

Multimodel inference for 'multimark' spatial population abundance models

plotSpatialData

Plot spatial capture-mark-recapture data

simdataClosedSCR

Simulate spatially-explicit capture-mark-recapture data from a (demographically) closed population with multiple non-invasive marks

Simulate open population capture-mark-recapture data arising from multiple non-invasive marks

Simulate closed population capture-mark-recapture data arising from multiple non-invasive marks