muscle (version 3.14.0)

muscle-package: Multiple Sequence Alignment

Description

MUSCLE performs multiple sequence alignments of nucleotide and amino acid sequences.

Details

Details about the algorithm can be found on the MUSCLE website: http://www.drive5.com/muscle/

References

Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.

See Also

muscle, umax

Examples

## Align sequences in an XStringSet object.
## Not run: 
# aln <- muscle(stringset = umax)
# ## End(Not run)