mutSignatures (version 1.2)

addWeak: Add Weak Mutation Types

Description

Restore Mutation Types that were initially excluded because a low number of total counts

Usage

addWeak(mutationTypesToAddSet, processes_I, processesStd_I, 
Wall_I, genomeErrors_I, genomesReconstructed_I)

Arguments

mutationTypesToAddSet

Set of mutations to restore

processes_I

Set of Mutational Processes

processesStd_I

Set of standard deviations of all Mutational Processes

Wall_I

Set of all W matrices previously extracted

genomeErrors_I

Set of all residuals

genomesReconstructed_I

Fitted Values according to the most likely Model

Value

Output is the final result of the deconvolution process

References

More info at: http://www.biotechworld.it/bioinf/2017/01/22/mutsignatures/

Examples

# NOT RUN {
# there are no examples for this function
message("No examples")
# }