mutSignatures (version 1.2)

deconvoluteMutCounts: Deconvolute Mutation Counts

Description

Characterize mutational signatures from cancer-derived somatic mutational catalogs

Usage

deconvoluteMutCounts(input.mutCounts, params)

Arguments

input.mutCounts

numeric matrix of Mutation Type Counts

params

object (list) including all parameters required for running the analysis

Value

list including all the results from the deconvolution analysis. This function is called within the decipherMutationalProcesses() function after parameters and input data have been validated.

References

More info at: http://www.biotechworld.it/bioinf/2017/01/22/mutsignatures/

Examples

# NOT RUN {
tmp <- getTestRunArgs(2)
tmp
deconvoluteMutCounts(input.mutCounts = tmp$mutCount.obj$mutCounts[1:5,1:6], params = tmp$params)
# }