mutSignatures (version 1.2)

extractSignatures: Extract Signatures from Genomic Mutational Catalogs

Description

Extract mutational signatures after the input Data and the input parameters have been checked and validated

Usage

extractSignatures(mutCountMatrix, params, verbose = TRUE)

Arguments

mutCountMatrix

numeric matrix of mutation counts

params

object (list) including all parameters for performing the analysis

verbose

logic, if TRUE the progress of the analysis will be printed to screen

Value

list including the following elements

Wall

extracted signatures

Hall

extracted effects

mutCounts.reconstructed

fitted values

mutCounts.errors

residuals

References

More info at: http://www.biotechworld.it/bioinf/2017/01/22/mutsignatures/

Examples

# NOT RUN {
tmp <- getTestRunArgs()
extractSignatures(mutCountMatrix = tmp$mutCount.obj$mutCounts[1:10,1:3], params = tmp$params)
# }