getTestRunArgs

<p>numeric, index corresponding to the type of test input to generate</p>

testN

<p>this function generates objects that can be used for running the examples in the package documentation files as well as some simple runs</p>

Cancer cells accumulate DNA mutations as result of DNA damage and DNA repair processes. This computational framework is aimed at deciphering DNA mutational signatures operating in cancer. The input is a numeric matrix of DNA mutation counts detected in a panel of cancer samples. The framework performs Non-negative Matrix Factorization to extract the most likely signatures explaining the observed set of DNA mutations. The framework relies on parallelization and is optimized for use on multi-core systems. This framework is an R-based implementation of the original MATLAB WTSI framework by Alexandrov LB et al (2013) <DOI:10.1016/j.celrep.2012.12.008>.

Damiano Fantini

getTestRunArgs: Generate Arguments for Running Examples and Mock Runs

Description

Usage

Arguments

Value

References

Examples