mutSignatures (version 1.2)

setMutCountObject: Create a Mutation Count Object Suitable for Signatures Extraction

Description

Create a Mutation Count Object that can be used as data input for running the Signatures Extraction Framework

Usage

setMutCountObject(mutCountMatrix, mutationTypes = NULL, 
sampleNames = NULL, datasetName = NULL)

Arguments

mutCountMatrix

numeric matrix of mutation counts

mutationTypes

vector including the mutation types

sampleNames

vector including sample names

datasetName

name of the dataset

Value

list including the mutation Count Matrix and input data for de-novo extracting Mutational Signatures

References

More info at: http://www.biotechworld.it/bioinf/2017/01/22/mutsignatures/

Examples

# NOT RUN {
tmp <- getTestRunArgs()[["mutCount.obj"]][["mutCounts"]]
tmp.obj <- setMutCountObject(tmp)
tmp.obj
# }