mutSignatures (version 2.1.1)

revCompl: Compute Reverse Complement sequences.

Description

Transform a DNA sequence into its reverse-complement sequence. ALternatively, only the reverse sequence (or only the complement) can be returned.

Usage

revCompl(DNAseq, rev = TRUE, compl = TRUE)

Arguments

DNAseq

character vector of DNA sequences

rev

logical, shall the reverse sequence be computed

compl

logical, shall the complementary sequence be computed

Value

a character vector including transformed DNA sequences

Details

This function is part of the user-interface set of tools included in mutSignatures. This is an exported function.

References

More information and examples about mutational signature analysis can be found here:

1. GitHub Repo: https://github.com/dami82/mutSignatures/

2. More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/

3. Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/

4. Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6

Examples

# NOT RUN {
A <- c("TAACCG", "CTCGA", "CNNA")
mutSignatures::revCompl(A)

# }