mutation_types_pave

<p>PAVE is a newer annotation software that supports annotaiton of mainly just a subset of SO terms,
but with a couple of important additions to indicate when a non-obvious consequence can be found thanks to phasing.</p>

Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) <http://www.sequenceontology.org/>, Mutation Annotation Format (MAF) <https://docs.gdc.cancer.gov/Encyclopedia/pages/Mutation_Annotation_Format_TCGAv2/> or Prediction and Annotation of Variant Effects (PAVE) <https://github.com/hartwigmedical/hmftools/tree/master/pave>.
It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.

Sam El-Kamand

mutationtypes

mutation_types_pave: Dictionary of PAVE terms

Description

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Examples