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mutoss (version 0.1-1)
GUI and wrappers for multiple testing procedures
Description
The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
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Install
install.packages('mutoss')
Monthly Downloads
3,471
Version
0.1-1
License
GPL
Maintainer
Kornelius Rohmeyer
Last Published
August 18th, 2010
Functions in mutoss (0.1-1)
Search functions
SUD
A general step-up-down procedure.
linearStepUp
Linear Step Up Service Function...
ABH_pi0_est
Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
BY
Benjamini-Yekutieli (2001) step-up procedure
indepBR
Blanchard-Roquain (2009) 1-stage adaptive step-up
BlaRoq
Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
MutossMethod-class
Class MutossMethod
adaptiveSTS
Storey-Taylor-Siegmund (2004) adaptive step-up procedure
pValuesPlot
A function plotting p-values...
calculateBetaAdjustment
Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
gao
Xin Gao's non-parametric multiple test procedure is applied to Data.
gatherStatistics
Gathering statistics from simulation()-Object
hommel
Hommel's (1988) step-up-procedure
compareMutoss
Functions for comparing outputs of different procedures.
ranktruncated
Rank truncated p-Value procedure...
MutossSim-class
Class MutossSim
gatherParameters
Extracts the parameters from the MutossSim objects in listOfObjects and...
SD
A general step-down procedure.
mutoss.apply
Applies a function to a Mutoss object.
SU
A general step-up procedure.
TSBKY_pi0_est
Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
holm
Holm's (1979) step-down-procedure
mutoss.plotCI
mutoss.plotCI
augmentation
Wrapper function to the augmentation methods of the multtest package.
BH
Benjamini-Hochberg (1995) linear step-up procedure
bonferroni
Bonferroni correction...
fisher23_fast
Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
rom
Rom's (1990) step-up-procedure.
tukey.wrapper
Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
mu.test.rates
Tests that different procedures used the same error rates.
multcomp.wrapper
Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
mu.test.name
Tests if all hypotheses have the same names.
ftest.marginal
Marginal F test
fisher23.model
Fisher-type (2x3) table as model for marginal hypotheses testing problems...
pval2locfdr
Strimmer et al.'s fdrtool-based local fdr
simulation
Simulation studies
two.stage
A p-value procedure which controls the FDR for independent test statistics.
adaptiveBH
Benjamini-Hochberg (2000) adaptive linear step-up procedure
BL
Benjamini-Liu (1999) step-down procedure
fisher22.marginal
Fisher (2x2) table association analysis for calculating all marginal p-values...
multiple.down
Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
regwq
REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
SidakSD
Sidak-like (1987) step-down procedure
paired.marginal
Marginal paired two sample test
mu.test.type
Tests that different procedures use the same error types.
mu.test.same.data
Tests if the same pvalues were used by different procedures.
fisher22_fast
Fisher (2x2) table association analysis for calculating one (marginal) p-value...
storey_pi0_est
Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
hochberg
Hochberg (1988) step-up procedure
fisher23.marginal
Fisher-type (2x3) table association analysis for calculating all marginal p-values...
multiple.down.adjust
A service function used by multiple...
nparcomp.wrapper
Simultaneous confidence intervals for relative contrast effects...
snk
Student - Newman - Keuls rejective test procedure.
mutoss.models
Mutoss Models
twostageBR
Blanchard-Roquain (2009) 2-stage adaptive step-up...
oracleBH
Bejamini-Hochberg (2000) oracle linear step-up Procedure...
aorc
Step-up-down test based on the asymptotically optimal rejection curve.
mu.test.class
Test for compatible classes for comparison...
printRejected
Internal MuTossProjekt-Function
nparcomp
Simultaneous confidence intervals for relative contrast effects...
sidak
Sidak correction
BR_pi0_est
Estimate of pi0 using the one-step Blanchard-Roquain procedure
twosamp.marginal
Marginal two sample test
ErrorControl-class
Class ErrorControl
Qvalue
Storey's (2001) q-value Procedure...
requireLibrary
Tries to load a package.
adjPValuesPlot
A function plotting adjusted p-values...
jointCDF.orderedUnif
Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
pval2qval
Strimmer et al.'s fdrtool-based q-values
Mutoss-class
Class Mutoss
onesamp.marginal
Marginal one sample test
reject
reject
fisher22.model
Fisher (2x2) table as model for marginal hypotheses testing problems...
notterman
Notterman data set