RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (0.1-13) of this package.
Take me there.
mutoss (version 0.1-3)
Unified multiple testing procedures
Description
The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
Copy Link
Copy
Link to current version
Version
Version
0.1-13
0.1-12
0.1-10
0.1-9
0.1-8
0.1-7
0.1-6
0.1-4
0.1-3
0.1-1
Down Chevron
Install
install.packages('mutoss')
Monthly Downloads
3,471
Version
0.1-3
License
GPL
Maintainer
Kornelius Rohmeyer
Last Published
September 15th, 2010
Functions in mutoss (0.1-3)
Search functions
BlaRoq
Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
compareMutoss
Functions for comparing outputs of different procedures.
fisher23.marginal
Fisher-type (2x3) table association analysis for calculating all marginal p-values...
pval2qval
Strimmer et al.'s fdrtool-based q-values
indepBR
Blanchard-Roquain (2009) 1-stage adaptive step-up
BL
Benjamini-Liu (1999) step-down procedure
ftest.marginal
Marginal F test
printRejected
Internal MuTossProjekt-Function
rom
Rom's (1990) step-up-procedure.
onesamp.marginal
Marginal one sample test
pval2locfdr
Strimmer et al.'s fdrtool-based local fdr
hochberg
Hochberg (1988) step-up procedure
jointCDF.orderedUnif
Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
fisher23_fast
Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
ErrorControl-class
Class ErrorControl
bonferroni
Bonferroni correction...
TSBKY_pi0_est
Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
Qvalue
Storey's (2001) q-value Procedure...
ABH_pi0_est
Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
adaptiveBH
Benjamini-Hochberg (2000) adaptive linear step-up procedure
tukey.wrapper
Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
aorc
Step-up-down test based on the asymptotically optimal rejection curve.
SD
A general step-down procedure.
regwq
REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
nparcomp.wrapper
Simultaneous confidence intervals for relative contrast effects...
multiple.down.adjust
A service function used by multiple...
mu.test.type
Tests that different procedures use the same error types.
augmentation
Wrapper function to the augmentation methods of the multtest package.
twostageBR
Blanchard-Roquain (2009) 2-stage adaptive step-up...
holm
Holm's (1979) step-down-procedure
reject
reject
snk
Student - Newman - Keuls rejective test procedure.
gao
Xin Gao's non-parametric multiple test procedure is applied to Data.
mutoss.plotCI
mutoss.plotCI
nparcomp
Simultaneous confidence intervals for relative contrast effects...
Mutoss-class
Class Mutoss
simulation
Simulation studies
mutoss.apply
Applies a function to a Mutoss object.
mu.test.same.data
Tests if the same pvalues were used by different procedures.
BY
Benjamini-Yekutieli (2001) step-up procedure
BH
Benjamini-Hochberg (1995) linear step-up procedure
oracleBH
Bejamini-Hochberg (2000) oracle linear step-up Procedure...
SidakSD
Sidak-like (1987) step-down procedure
SUD
A general step-up-down procedure.
fisher22_fast
Fisher (2x2) table association analysis for calculating one (marginal) p-value...
mu.test.rates
Tests that different procedures used the same error rates.
paired.marginal
Marginal paired two sample test
multcomp.wrapper
Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
BR_pi0_est
Estimate of pi0 using the one-step Blanchard-Roquain procedure
MutossMethod-class
Class MutossMethod
adjPValuesPlot
A function plotting adjusted p-values...
hommel
Hommel's (1988) step-up-procedure
mutoss.models
Mutoss Models
sidak
Sidak correction
notterman
Notterman data set
fisher22.marginal
Fisher (2x2) table association analysis for calculating all marginal p-values...
multiple.down
Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
mu.test.name
Tests if all hypotheses have the same names.
gatherParameters
Extracts the parameters from the MutossSim objects in listOfObjects and...
twosamp.marginal
Marginal two sample test
MutossSim-class
Class MutossSim
mu.test.class
Test for compatible classes for comparison...
adaptiveSTS
Storey-Taylor-Siegmund (2004) adaptive step-up procedure
gatherStatistics
Gathering statistics from MutossSim objects
pValuesPlot
A function plotting p-values...
ranktruncated
Rank truncated p-Value procedure...
two.stage
A p-value procedure which controls the FDR for independent test statistics.
storey_pi0_est
Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
requireLibrary
Tries to load a package.
SU
A general step-up procedure.
calculateBetaAdjustment
Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
linearStepUp
Linear Step Up Service Function...