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mutoss (version 0.1-6)
Unified multiple testing procedures
Description
The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
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Install
install.packages('mutoss')
Monthly Downloads
3,471
Version
0.1-6
License
GPL
Maintainer
Kornelius Rohmeyer
Last Published
December 6th, 2011
Functions in mutoss (0.1-6)
Search functions
mu.test.rates
Tests that different procedures used the same error rates.
BL
Benjamini-Liu (1999) step-down procedure
hommel
Hommel's (1988) step-up-procedure
storey_pi0_est
Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
ftest.marginal
Marginal F test
notterman
Notterman data set
nparcomp.wrapper
Simultaneous confidence intervals for relative contrast effects...
adaptiveBH
Benjamini-Hochberg (2000) adaptive linear step-up procedure
ABH_pi0_est
Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
gao
Xin Gao's non-parametric multiple test procedure is applied to Data.
gatherParameters
Extracts the parameters from the simulation()-Object
reject
reject
mutoss.models
Mutoss Models
printRejected
Internal MuTossProjekt-Function
BH
Benjamini-Hochberg (1995) linear step-up procedure
rom
Rom's (1990) step-up-procedure.
Qvalue
Storey's (2001) q-value Procedure...
mu.test.name
Tests if all hypotheses have the same names.
pValuesPlot
A function plotting p-values...
regwq
REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
gatherStatistics
Gathering statistics from simulation()-Object
requireLibrary
Tries to load a package.
aorc
Step-up-down test based on the asymptotically optimal rejection curve.
multiple.down
Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
holm
Holm's (1979) step-down-procedure
fisher22_fast
Fisher (2x2) table association analysis for calculating one (marginal) p-value...
mutoss.plotCI
mutoss.plotCI
linearStepUp
Linear Step Up Service Function...
fisher23_fast
Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
sidak
Sidak correction
indepBR
Blanchard-Roquain (2009) 1-stage adaptive step-up
adaptiveSTS
Storey-Taylor-Siegmund (2004) adaptive step-up procedure
mu.test.same.data
Tests if the same pvalues were used by different procedures.
fisher23.marginal
Fisher-type (2x3) table association analysis for calculating all marginal p-values...
SD
A general step-down procedure.
mu.test.class
Test for compatible classes for comparison...
SUD
A general step-up-down procedure.
augmentation
Wrapper function to the augmentation methods of the multtest package.
tukey.wrapper
Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
Mutoss-class
Class Mutoss
SidakSD
Sidak-like (1987) step-down procedure
mutoss.apply
Applies a function to a Mutoss object.
multcomp.wrapper
Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
multiple.down.adjust
A service function used by multiple...
BlaRoq
Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
SU
A general step-up procedure.
BY
Benjamini-Yekutieli (2001) step-up procedure
adjPValuesPlot
A function plotting adjusted p-values...
bonferroni
Bonferroni correction...
pval2qval
Strimmer et al.'s fdrtool-based q-values
twosamp.marginal
Marginal two sample test
ErrorControl-class
Class ErrorControl
TSBKY_pi0_est
Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
MutossMethod-class
Class MutossMethod
nparcomp
Simultaneous confidence intervals for relative contrast effects...
jointCDF.orderedUnif
Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
compareMutoss
Functions for comparing outputs of different procedures.
fisher22.marginal
Fisher (2x2) table association analysis for calculating all marginal p-values...
onesamp.marginal
Marginal one sample test
hochberg
Hochberg (1988) step-up procedure
paired.marginal
Marginal paired two sample test
simulation
Simulation studies
two.stage
A p-value procedure which controls the FDR for independent test statistics.
oracleBH
Bejamini-Hochberg (2000) oracle linear step-up Procedure...
twostageBR
Blanchard-Roquain (2009) 2-stage adaptive step-up...
pval2locfdr
Strimmer et al.'s fdrtool-based local fdr
BR_pi0_est
Estimate of pi0 using the one-step Blanchard-Roquain procedure
calculateBetaAdjustment
Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
mu.test.type
Tests that different procedures use the same error types.
ranktruncated
Rank truncated p-Value procedure...
snk
Student - Newman - Keuls rejective test procedure.