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mutoss (version 0.1-7)
Unified multiple testing procedures
Description
The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
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Install
install.packages('mutoss')
Monthly Downloads
3,471
Version
0.1-7
License
GPL
Maintainer
Kornelius Rohmeyer
Last Published
May 7th, 2012
Functions in mutoss (0.1-7)
Search functions
adaptiveBH
Benjamini-Hochberg (2000) adaptive linear step-up procedure
mu.test.class
Test for compatible classes for comparison...
adaptiveSTS
Storey-Taylor-Siegmund (2004) adaptive step-up procedure
fisher23.marginal
Fisher-type (2x3) table association analysis for calculating all marginal p-values...
SUD
A general step-up-down procedure.
BH
Benjamini-Hochberg (1995) linear step-up procedure
mu.test.rates
Tests that different procedures used the same error rates.
SidakSD
Sidak-like (1987) step-down procedure
hommel
Hommel's (1988) step-up-procedure
ABH_pi0_est
Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
gatherStatistics
Gathering statistics from simulation()-Object
Qvalue
Storey's (2001) q-value Procedure...
augmentation
Wrapper function to the augmentation methods of the multtest package.
Mutoss-class
Class Mutoss
mu.test.name
Tests if all hypotheses have the same names.
mu.test.type
Tests that different procedures use the same error types.
SU
A general step-up procedure.
TSBKY_pi0_est
Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
BL
Benjamini-Liu (1999) step-down procedure
ErrorControl-class
Class ErrorControl
jointCDF.orderedUnif
Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
hochberg
Hochberg (1988) step-up procedure
gatherParameters
Extracts the parameters from the simulation()-Object
nparcomp
Simultaneous confidence intervals for relative contrast effects...
BlaRoq
Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
holm
Holm's (1979) step-down-procedure
gao
Xin Gao's non-parametric multiple test procedure is applied to Data.
multiple.down
Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
mutoss.models
Mutoss Models
linearStepUp
Linear Step Up Service Function...
regwq
REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
bonferroni
Bonferroni correction...
storey_pi0_est
Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
aorc
Step-up-down test based on the asymptotically optimal rejection curve.
BR_pi0_est
Estimate of pi0 using the one-step Blanchard-Roquain procedure
reject
reject
indepBR
Blanchard-Roquain (2009) 1-stage adaptive step-up
notterman
Notterman data set
twostageBR
Blanchard-Roquain (2009) 2-stage adaptive step-up...
fisher22_fast
Fisher (2x2) table association analysis for calculating one (marginal) p-value...
snk
Student - Newman - Keuls rejective test procedure.
rom
Rom's (1990) step-up-procedure.
BY
Benjamini-Yekutieli (2001) step-up procedure
ftest.marginal
Marginal F test
compareMutoss
Functions for comparing outputs of different procedures.
MutossMethod-class
Class MutossMethod
calculateBetaAdjustment
Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
simulation
Simulation studies
paired.marginal
Marginal paired two sample test
fisher22.marginal
Fisher (2x2) table association analysis for calculating all marginal p-values...
ranktruncated
Rank truncated p-Value procedure...
multiple.down.adjust
A service function used by multiple...
mutoss.apply
Applies a function to a Mutoss object.
printRejected
Internal MuTossProjekt-Function
tukey.wrapper
Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
fisher23_fast
Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
two.stage
A p-value procedure which controls the FDR for independent test statistics.
pval2qval
Strimmer et al.'s fdrtool-based q-values
mutoss.plotCI
mutoss.plotCI
requireLibrary
Tries to load a package.
multcomp.wrapper
Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
twosamp.marginal
Marginal two sample test
sidak
Sidak correction
nparcomp.wrapper
Simultaneous confidence intervals for relative contrast effects...
adjPValuesPlot
A function plotting adjusted p-values...
SD
A general step-down procedure.
mu.test.same.data
Tests if the same pvalues were used by different procedures.
pValuesPlot
A function plotting p-values...
pval2locfdr
Strimmer et al.'s fdrtool-based local fdr
onesamp.marginal
Marginal one sample test
oracleBH
Bejamini-Hochberg (2000) oracle linear step-up Procedure...