mvabund v3.12.3
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by David Warton
Statistical Methods for Analysing Multivariate Abundance Data
A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
'mvabund-package.Rd' for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Functions in mvabund
| Name | Description | |
| Tasmania | Tasmania Dataset | |
| anova.manyany | Analysis of Deviance for Many Univariate Models Fitted to Multivariate Abundance Data | |
| cv.glm1path | ||
| deviance.manylm | Model Deviance | |
| best.r.sq | ||
| anova.manylm | ANOVA for Linear Model Fits for Multivariate Abundance Data | |
| anova.traitglm | Testing for a environment-by-trait (fourth corner) interaction by analysis of deviance | |
| antTraits | Ant data, with species traits | |
| boxplot.mvabund | Boxplots for multivariate abundance Data | |
| glm1 | ||
| glm1path | ||
| anova.manyglm | Analysis of Deviance for Multivariate Generalized Linear Model | |
| manylm.fit | workhose functions for fitting multivariate linear models | |
| meanvar.plot | ||
| plot.manyany | Plot Diagnostics for a manyany or glm1path Object | |
| plot.manylm | Plot Diagnostics for a manylm or a manyglm Object | |
| plot.mvabund | Plot Multivariate Abundance Data and Formulae | |
| plotMvaFactor | Draw a Mvabund Object split into groups. | |
| logLik.manylm | Calculate the Log Likelihood | |
| manyany | Fitting Many Univariate Models to Multivariate Abundance Data | |
| mvabund | Multivariate Abundance Data Objects | |
| mvformula | Model Formulae for Multivariate Abundance Data | |
| extend.x.formula | Extend a Formula to all of it's Terms | |
| formulaUnimva | Create a List of Univariate Formulas | |
| mvabund-internal | Internal mvabund Objects | |
| mvabund-package | Statistical methods for analysing multivariate abundance data | |
| solberg | Solberg Data | |
| spider | Spider data | |
| predict.traitglm | ||
| residuals.manyglm | Residuals for MANYGLM, MANYANY, GLM1PATH Fits | |
| manyglm | Fitting Generalized Linear Models for Multivariate Abundance Data | |
| manylm | Fitting Linear Models for Multivariate Abundance Data | |
| predict.manyglm | Predict Method for MANYGLM Fits | |
| tikus | Tikus Island Dataset | |
| traitglm | ||
| unabund | Remove the mvabund Class Attribute | |
| summary.manyglm | Summarizing Multivariate Generalized Linear Model Fits for Abundance Data | |
| summary.manylm | Summarizing Linear Model Fits for Multivariate Abundance Data | |
| predict.manylm | Model Predictions for Multivariate Linear Models | |
| ridgeParamEst | ||
| shiftpoints | Calculate a shift for plotting overlapping points | |
| No Results! | ||
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Details
| Date | 2017-04-23 |
| LinkingTo | Rcpp, RcppGSL |
| License | LGPL (>= 2.1) |
| NeedsCompilation | yes |
| Packaged | 2017-04-24 10:26:18 UTC; alice |
| Repository | CRAN |
| Date/Publication | 2017-04-27 23:27:39 UTC |
| imports | MASS , methods , parallel , Rcpp , statmod , stats , tweedie |
| depends | R (>= 3.0.0) |
| linkingto | RcppGSL |
| Contributors | Dirk Eddelbuettel, Yi Wang, Ulrike Naumann, Stephen Wright, David Warton |
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