mvabund v3.12.3

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by David Warton

Statistical Methods for Analysing Multivariate Abundance Data

A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See 'mvabund-package.Rd' for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.

Functions in mvabund

Name Description
Tasmania Tasmania Dataset
anova.manyany Analysis of Deviance for Many Univariate Models Fitted to Multivariate Abundance Data
cv.glm1path
deviance.manylm Model Deviance
best.r.sq
anova.manylm ANOVA for Linear Model Fits for Multivariate Abundance Data
anova.traitglm Testing for a environment-by-trait (fourth corner) interaction by analysis of deviance
antTraits Ant data, with species traits
boxplot.mvabund Boxplots for multivariate abundance Data
glm1
glm1path
anova.manyglm Analysis of Deviance for Multivariate Generalized Linear Model
manylm.fit workhose functions for fitting multivariate linear models
meanvar.plot
plot.manyany Plot Diagnostics for a manyany or glm1path Object
plot.manylm Plot Diagnostics for a manylm or a manyglm Object
plot.mvabund Plot Multivariate Abundance Data and Formulae
plotMvaFactor Draw a Mvabund Object split into groups.
logLik.manylm Calculate the Log Likelihood
manyany Fitting Many Univariate Models to Multivariate Abundance Data
mvabund Multivariate Abundance Data Objects
mvformula Model Formulae for Multivariate Abundance Data
extend.x.formula Extend a Formula to all of it's Terms
formulaUnimva Create a List of Univariate Formulas
mvabund-internal Internal mvabund Objects
mvabund-package Statistical methods for analysing multivariate abundance data
solberg Solberg Data
spider Spider data
predict.traitglm
residuals.manyglm Residuals for MANYGLM, MANYANY, GLM1PATH Fits
manyglm Fitting Generalized Linear Models for Multivariate Abundance Data
manylm Fitting Linear Models for Multivariate Abundance Data
predict.manyglm Predict Method for MANYGLM Fits
tikus Tikus Island Dataset
traitglm
unabund Remove the mvabund Class Attribute
summary.manyglm Summarizing Multivariate Generalized Linear Model Fits for Abundance Data
summary.manylm Summarizing Linear Model Fits for Multivariate Abundance Data
predict.manylm Model Predictions for Multivariate Linear Models
ridgeParamEst
shiftpoints Calculate a shift for plotting overlapping points
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Details

Date 2017-04-23
LinkingTo Rcpp, RcppGSL
License LGPL (>= 2.1)
NeedsCompilation yes
Packaged 2017-04-24 10:26:18 UTC; alice
Repository CRAN
Date/Publication 2017-04-27 23:27:39 UTC

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