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mvabund (version 3.8.3)

statistical methods for analysing multivariate abundance data

Description

A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See mvabund-package.Rd for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.

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Version

Install

install.packages('mvabund')

Monthly Downloads

1,713

Version

3.8.3

License

LGPL (>= 2.1)

Maintainer

Yi Wang

Last Published

November 8th, 2013

Functions in mvabund (3.8.3)

summary.manylm

Summarizing Linear Model Fits for Multivariate Abundance Data
mvformula

Model Formulae for Multivariate Abundance Data
Tasmania

Tasmania Dataset
manylm.fit

workhose functions for fitting multivariate linear models
residuals.manyglm

Residuals for MANYGLM Fits
formulaUnimva

Create a List of Univariate Formulas
plot.mvabund

Plot Multivariate Abundance Data and Formulae
anova.manyglm

Analysis of Deviance for Multivariate Generalized Linear Model Fits for Abundance Data
solberg

Solberg Data
unabund

Remove the mvabund Class Attribute
shiftpoints

Calculate a shift for plotting overlapping points
spider

Spider data
tikus

Tikus Island Dataset
meanvar.plot

Construct Mean-Variance plots for Multivariate Abundance Data
manylm

Fitting Linear Models for Multivariate Abundance Data
predict.manylm

Model Predictions for Multivariate Linear Models
mvabund

Multivariate Abundance Data Objects
best.r.sq

Use R^2 to find the variables that best explain a multivariate response.
summary.manyglm

Summarizing Multivariate Generalized Linear Model Fits for Abundance Data
mvabund-internal

Internal mvabund Objects
anova.manylm

ANOVA for Linear Model Fits for Multivariate Abundance Data
boxplot.mvabund

Boxplots for multivariate abundance Data
manyglm

Fitting Generalized Linear Models for Multivariate Abundance Data
plotMvaFactor

Draw a Mvabund Object split into groups.
ridgeParamEst

Estimation of the ridge parameter
plot.manylm

Plot Diagnostics for a manylm or a manyglm Object
predict.manyglm

Predict Method for MANYGLM Fits
deviance.manylm

Model Deviance
mvabund-package

Statistical methods for analysing multivariate abundance data
extend.x.formula

Extend a Formula to all of it's Terms
logLik.manylm

Calculate the Log Likelihood