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mvabund (version 3.9.1)

statistical methods for analysing multivariate abundance data

Description

A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See mvabund-package.Rd for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.

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Version

Install

install.packages('mvabund')

Monthly Downloads

1,820

Version

3.9.1

License

LGPL (>= 2.1)

Maintainer

Yi Wang

Last Published

June 28th, 2014

Functions in mvabund (3.9.1)

meanvar.plot

Construct Mean-Variance plots for Multivariate Abundance Data
manylm.fit

workhose functions for fitting multivariate linear models
boxplot.mvabund

Boxplots for multivariate abundance Data
plot.mvabund

Plot Multivariate Abundance Data and Formulae
manylm

Fitting Linear Models for Multivariate Abundance Data
plotMvaFactor

Draw a Mvabund Object split into groups.
predict.manyglm

Predict Method for MANYGLM Fits
residuals.manyglm

Residuals for MANYGLM or MANYANY Fits
plot.manyany

Plot Diagnostics for a manyany Object
unabund

Remove the mvabund Class Attribute
manyany

Fitting Many Univariate Models to Multivariate Abundance Data
ridgeParamEst

Estimation of the ridge parameter
solberg

Solberg Data
mvabund-internal

Internal mvabund Objects
Tasmania

Tasmania Dataset
deviance.manylm

Model Deviance
plot.manylm

Plot Diagnostics for a manylm or a manyglm Object
anova.manyany

Analysis of Deviance for Many Univariate Models Fitted to Multivariate Abundance Data
summary.manylm

Summarizing Linear Model Fits for Multivariate Abundance Data
shiftpoints

Calculate a shift for plotting overlapping points
anova.manylm

ANOVA for Linear Model Fits for Multivariate Abundance Data
manyglm

Fitting Generalized Linear Models for Multivariate Abundance Data
tikus

Tikus Island Dataset
best.r.sq

Use R^2 to find the variables that best explain a multivariate response.
extend.x.formula

Extend a Formula to all of it's Terms
mvabund

Multivariate Abundance Data Objects
mvformula

Model Formulae for Multivariate Abundance Data
anova.manyglm

Analysis of Deviance for Multivariate Generalized Linear Model Fits for Abundance Data
spider

Spider data
mvabund-package

Statistical methods for analysing multivariate abundance data
summary.manyglm

Summarizing Multivariate Generalized Linear Model Fits for Abundance Data
formulaUnimva

Create a List of Univariate Formulas
logLik.manylm

Calculate the Log Likelihood
predict.manylm

Model Predictions for Multivariate Linear Models