mvp (version 1.0.1)

MVP.GLM: To perform GWAS with GLM model and get the P value of SNPs

Description

To perform GWAS with GLM model and get the P value of SNPs

Usage

MVP.GLM(phe, geno, CV=NULL, priority="speed", genoName=NULL, cpu=2, memo="MVP.GLM")

Arguments

phe

phenotype, n * 2 matrix

geno

genotype, m * n, m is marker size, n is population size

CV

covariates

priority

speed or memory

genoName

name of genotype file, when priority is memory, it is used for attach bigmatrix under windows platform

cpu

number of cpus used for parallel computation

memo

a marker on output file name