.get_expression_from_seurat

Extract expression matrix from Seurat object, preserving sparse format when possible.

internal

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

.get_expression_from_seurat function

<dl><dt>seurat</dt>
<dd>A Seurat object</dd>
<dt>layer</dt>
<dd>Character string specifying which layer to use</dd></dl>

Arguments

Get Expression Matrix from Seurat Object — .get_expression_from_seurat

<dl>

<dt>seurat</dt>
<dd>A Seurat object</dd>


<dt>layer</dt>
<dd>Character string specifying which layer to use</dd>

</dl>

.get_expression_from_seurat: Get Expression Matrix from Seurat Object

Description

Usage

Value

Arguments