.prepare_sc_plot_data

Prepare data frame for single-cell plotting with flexible identities

internal

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

.prepare_sc_plot_data function

<dl><dt>phyex_set</dt>
<dd>A ScPhyloExpressionSet object</dd>
<dt>primary_identity</dt>
<dd>Primary identity column name</dd>
<dt>secondary_identity</dt>
<dd>Secondary identity column name (optional)</dd></dl>

Arguments

Prepare Single-Cell Plot Data — .prepare_sc_plot_data

<dl>

<dt>phyex_set</dt>
<dd>A ScPhyloExpressionSet object</dd>


<dt>primary_identity</dt>
<dd>Primary identity column name</dd>


<dt>secondary_identity</dt>
<dd>Secondary identity column name (optional)</dd>

</dl>

.prepare_sc_plot_data: Prepare Single-Cell Plot Data

Description

Usage

Value

Arguments