.pseudobulk_expression

Aggregate single-cell data by cell identity to create pseudobulk expression.

internal

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

.pseudobulk_expression function

<dl><dt>expression</dt>
<dd>Expression matrix with genes as rows and cells as columns</dd>
<dt>groups</dt>
<dd>Factor vector indicating which group each cell belongs to</dd></dl>

Arguments

Create Pseudobulk Expression Data — .pseudobulk_expression

<dl>

<dt>expression</dt>
<dd>Expression matrix with genes as rows and cells as columns</dd>


<dt>groups</dt>
<dd>Factor vector indicating which group each cell belongs to</dd>

</dl>

.pseudobulk_expression: Create Pseudobulk Expression Data

Description

Usage

Value

Arguments