TXI_conf_int

Compute confidence intervals for the TXI using bootstrapped TXI values.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

TXI_conf_int function

<dl><dt>phyex_set</dt>
<dd>A BulkPhyloExpressionSet object</dd>
<dt>probs</dt>
<dd>Numeric vector of probabilities for the confidence interval (default: c(0.025, 0.975))</dd></dl>

Arguments

Confidence Intervals for Transcriptomic Index (TXI) — TXI_conf_int

<dl>

<dt>phyex_set</dt>
<dd>A BulkPhyloExpressionSet object</dd>


<dt>probs</dt>
<dd>Numeric vector of probabilities for the confidence interval (default: c(0.025, 0.975))</dd>

</dl>

TXI_conf_int: Confidence Intervals for Transcriptomic Index (TXI)

Description

Usage

Value

Arguments

Details