as_BulkPhyloExpressionSet

This function is an alias for <code>BulkPhyloExpressionSet_from_df</code>. 
Please refer to the documentation for <code>BulkPhyloExpressionSet_from_df</code> for usage details, arguments, and examples.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

as_BulkPhyloExpressionSet function

<dl><dt>data</dt>
<dd>A data frame with phylostratum assignments and gene expression data</dd>
<dt>groups</dt>
<dd>Vector of group labels for the samples/replicates</dd>
<dt>name</dt>
<dd>Character string to name the dataset</dd>
<dt>strata_legend</dt>
<dd>Optional data frame mapping phylostratum numbers to labels</dd>
<dt>...</dt>
<dd>Additional arguments passed to BulkPhyloExpressionSet_from_df</dd></dl>

Arguments

as_BulkPhyloExpressionSet — as_BulkPhyloExpressionSet

<dl>

<dt>data</dt>
<dd>A data frame with phylostratum assignments and gene expression data</dd>


<dt>groups</dt>
<dd>Vector of group labels for the samples/replicates</dd>


<dt>name</dt>
<dd>Character string to name the dataset</dd>


<dt>strata_legend</dt>
<dd>Optional data frame mapping phylostratum numbers to labels</dd>


<dt>...</dt>
<dd>Additional arguments passed to BulkPhyloExpressionSet_from_df</dd>

</dl>

as_BulkPhyloExpressionSet: as_BulkPhyloExpressionSet

Description

Usage

Value

Arguments

See Also