myTAI (version 2.3.4)

as_data_frame: Convert BulkPhyloExpressionSet to Data Frame

Description

Convert a BulkPhyloExpressionSet object back to the original data frame format with phylostratum, gene ID, and expression data as columns.

Usage

as_data_frame(phyex_set, use_collapsed = FALSE)

Value

A data frame where column 1 contains phylostratum information, column 2 contains gene IDs, and columns 3+ contain expression data

Arguments

phyex_set

A BulkPhyloExpressionSet object

use_collapsed

Logical indicating whether to use collapsed expression data (default: FALSE)

Examples

# Convert BulkPhyloExpressionSet back to data frame
df <- as_data_frame(example_phyex_set)
df_collapsed <- as_data_frame(example_phyex_set, use_collapsed = TRUE)