Create plots showing how consensus gene set sizes and p-values converge across GATAI runs for different threshold values.
convergence_plots(phyex_set, runs, ps = c(0.5))A list with two ggplot objects:
Plot showing convergence of consensus set sizes
Plot showing convergence of p-values
A PhyloExpressionSet object
List of GATAI run results
Vector of consensus thresholds to analyze (default: c(0.5))
This function analyzes how consensus gene sets and their statistical significance change as more GATAI runs are included in the analysis. It uses cached null distributions for efficient p-value calculation. # Create convergence plots # conv_plots <- convergence_plots(phyex_set, gatai_runs, ps = c(0.25, 0.5, 0.75))