downsample_expression

Downsample an expression matrix by randomly selecting a specified number of samples from each group.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

downsample_expression function

<dl><dt>expression_matrix</dt>
<dd>Expression matrix with genes as rows and samples as columns</dd>
<dt>groups</dt>
<dd>Factor vector indicating which group each sample belongs to</dd>
<dt>downsample</dt>
<dd>Integer, number of samples to keep per group (default: 10)</dd></dl>

Arguments

Downsample Expression Matrix by Groups — downsample_expression

<dl>

<dt>expression_matrix</dt>
<dd>Expression matrix with genes as rows and samples as columns</dd>


<dt>groups</dt>
<dd>Factor vector indicating which group each sample belongs to</dd>


<dt>downsample</dt>
<dd>Integer, number of samples to keep per group (default: 10)</dd>

</dl>

downsample_expression: Downsample Expression Matrix by Groups

Description

Usage

Value

Arguments

Details