omit_matrix

For each gene i, exclude the corresponding gene i from the
PhyloExpressionSet and compute the TXI profile for the dataset with gene i excluded. 
This procedure results in a TXI profile matrix storing the TXI profile for each omitted gene i.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

omit_matrix function

<dl><dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd></dl>

Arguments

Author

Compute TXI Profiles Omitting Each Gene — omit_matrix

<dl>

<dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd>

</dl>

omit_matrix: Compute TXI Profiles Omitting Each Gene

Description

Usage

Value

Arguments

Author

Details

Examples