pTXI

Calculate pTXI values for expression data. This is a generic function
that dispatches based on the input type.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

pTXI function

<dl><dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd>
<dt>reps</dt>
<dd>Whether to return pTXI for each sample instead for each group</dd></dl>

Arguments

Calculate Phylostratum-Specific Transcriptomic Index — pTXI

<dl>

<dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd>


<dt>reps</dt>
<dd>Whether to return pTXI for each sample instead for each group</dd>

</dl>

pTXI: Calculate Phylostratum-Specific Transcriptomic Index

Description

Usage

Value

Arguments