plot_relative_expression_bar

Plots mean relative expression levels for age category groups using a PhyloExpressionSet S7 object, with statistical testing.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

plot_relative_expression_bar function

<dl><dt>phyex_set</dt>
<dd>A PhyloExpressionSet object (BulkPhyloExpressionSet or ScPhyloExpressionSet).</dd>
<dt>groups</dt>
<dd>A list of integer vectors specifying age categories (e.g., phylostrata) for each group (2+ groups).</dd>
<dt>p_adjust_method</dt>
<dd>P-value adjustment for multiple testing.</dd>
<dt>...</dt>
<dd>Further arguments passed to ggplot2 geoms.</dd></dl>

Arguments

Plot Mean Relative Expression Levels as Barplot — plot_relative_expression_bar

<dl>

<dt>phyex_set</dt>
<dd>A PhyloExpressionSet object (BulkPhyloExpressionSet or ScPhyloExpressionSet).</dd>


<dt>groups</dt>
<dd>A list of integer vectors specifying age categories (e.g., phylostrata) for each group (2+ groups).</dd>


<dt>p_adjust_method</dt>
<dd>P-value adjustment for multiple testing.</dd>


<dt>...</dt>
<dd>Further arguments passed to ggplot2 geoms.</dd>

</dl>

plot_relative_expression_bar: Plot Mean Relative Expression Levels as Barplot

Description

Usage

Value

Arguments