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myTAI (version 2.3.4)

plot_relative_expression_line: Plot Relative Expression Profiles (Line Plot)

Description

Plots relative expression profiles for age categories using a PhyloExpressionSet S7 object.

Usage

plot_relative_expression_line(
  phyex_set,
  groups,
  modules = NULL,
  adjust_range = TRUE,
  alpha = 0.1,
  ...
)

Value

ggplot2 object or list of ggplot2 objects.

Arguments

phyex_set

A PhyloExpressionSet object (BulkPhyloExpressionSet or ScPhyloExpressionSet).

groups

A list of integer vectors specifying age categories (e.g., phylostrata) for each group (1 or 2 groups).

modules

Optional list for shading modules: list(early=..., mid=..., late=...).

adjust_range

Logical, adjust y-axis range for both panels (if 2 groups).

alpha

Transparency for shaded module area.

...

Further arguments passed to ggplot2 geoms.