relative_expression

Functions for computing and plotting relative expression profiles using PhyloExpressionSet S7 objects.
Computes the relative expression profile for a given gene expression matrix. 
The relative expression is calculated by normalizing the column means of the matrix to a [0, 1] scale.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

relative_expression function

<dl><dt>count_matrix</dt>
<dd>A numeric matrix where columns represent developmental stages/cell types and rows represent genes.</dd></dl>

Arguments

Relative Expression Functions — relative_expression

<dl>

<dt>count_matrix</dt>
<dd>A numeric matrix where columns represent developmental stages/cell types and rows represent genes.</dd>

</dl>

relative_expression: Relative Expression Functions

Description

Usage

Value

Arguments