save_gatai_results_pdf

Save removed gene IDs and all GATAI analysis plots to a PDF file.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

save_gatai_results_pdf function

<dl><dt>phyex_set</dt>
<dd>A PhyloExpressionSet object containing the original gene expression data.</dd>
<dt>gatai_result</dt>
<dd>Result list from <code>destroy_pattern()</code>, containing GATAI analysis output.</dd>
<dt>analysis_dir</dt>
<dd>Directory to save the PDF file.</dd>
<dt>prefix</dt>
<dd>Optional prefix for the PDF filename (default: "report").</dd>
<dt>...</dt>
<dd>Additional arguments passed to <code>plot_gatai_results()</code>.</dd></dl>

Arguments

Save GATAI Analysis Results to PDF — save_gatai_results_pdf

<dl>

<dt>phyex_set</dt>
<dd>A PhyloExpressionSet object containing the original gene expression data.</dd>


<dt>gatai_result</dt>
<dd>Result list from <code>destroy_pattern()</code>, containing GATAI analysis output.</dd>


<dt>analysis_dir</dt>
<dd>Directory to save the PDF file.</dd>


<dt>prefix</dt>
<dd>Optional prefix for the PDF filename (default: "report").</dd>


<dt>...</dt>
<dd>Additional arguments passed to <code>plot_gatai_results()</code>.</dd>

</dl>

save_gatai_results_pdf: Save GATAI Analysis Results to PDF

Description

Usage

Value

Arguments