set_expression

Collection of functions for transforming gene expression data
in PhyloExpressionSet objects.
Generic function to set the expression matrix in a PhyloExpressionSet object.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

set_expression function

<dl><dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd>
<dt>new_expression</dt>
<dd>Matrix to set as the new expression</dd>
<dt>new_name</dt>
<dd>Optional new name for the dataset</dd>
<dt>...</dt>
<dd>Additional arguments</dd></dl>

Arguments

Gene Expression Transformation Functions — set_expression

<dl>

<dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd>


<dt>new_expression</dt>
<dd>Matrix to set as the new expression</dd>


<dt>new_name</dt>
<dd>Optional new name for the dataset</dd>


<dt>...</dt>
<dd>Additional arguments</dd>

</dl>

set_expression: Gene Expression Transformation Functions

Description

Usage

Value

Arguments