Convenience alias for transform_counts function.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

tf function

<dl><dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd>
<dt>FUN</dt>
<dd>Function to apply</dd>
<dt>FUN_name</dt>
<dd>Name of the transformation function (optional)</dd>
<dt>new_name</dt>
<dd>Name for the new dataset (optional)</dd>
<dt>...</dt>
<dd>Additional arguments passed to FUN</dd></dl>

Arguments

Short Alias for Transform Counts — tf

<dl>

<dt>phyex_set</dt>
<dd>A PhyloExpressionSet object</dd>


<dt>FUN</dt>
<dd>Function to apply</dd>


<dt>FUN_name</dt>
<dd>Name of the transformation function (optional)</dd>


<dt>new_name</dt>
<dd>Name for the new dataset (optional)</dd>


<dt>...</dt>
<dd>Additional arguments passed to FUN</dd>

</dl>

tf: Short Alias for Transform Counts

Description

Usage

Value

Arguments

See Also