tf_PS

This function performs transformation of phylostratum values.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

tf_PS function

<dl><dt>phyex_set</dt>
<dd>a <code>PhyloExpressionSet</code> S7 object.</dd>
<dt>transform</dt>
<dd>a character vector of any valid function that transforms PS values.
Possible values can be:<ul>
<li><code>transform</code> = <code>"qr"</code> (or <code>"quantilerank"</code>) :
quantile rank transformation analogous to Julia function <code>StatsBase.quantilerank</code>
using <code>method = :tied</code>.</li>
</ul></dd></dl>

Arguments

Jaruwatana Sodai Lotharukpong and Lukas Maischak

Author

Transform Phylostratum Values — tf_PS

<dl>

<dt>phyex_set</dt>
<dd>a <code>PhyloExpressionSet</code> S7 object.</dd>


<dt>transform</dt>
<dd>a character vector of any valid function that transforms PS values.
Possible values can be:<ul>
<li><code>transform</code> = <code>"qr"</code> (or <code>"quantilerank"</code>) :
quantile rank transformation analogous to Julia function <code>StatsBase.quantilerank</code>
using <code>method = :tied</code>.</li>
</ul></dd>

</dl>

tf_PS: Transform Phylostratum Values

Description

Usage

Value

Arguments

Author

Details

See Also

Examples