tf_stability

tf_stability statistically evaluates the
stability of phylotranscriptomics permutation tests (e.g., <code>stat_flatline_test</code>, <code>stat_reductive_hourglass_test</code>, etc.)
under different data transformations using a <code>PhyloExpressionSet</code>.

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Hajk-Georg Drost

myTAI

Evolutionary Transcriptomics

Stefan Manolache

Jaruwatana Sodai Lotharukpong

Nikola Kalábová

Filipa Martins Costa

Kristian K Ullrich

tf_stability function

<dl><dt>phyex_set</dt>
<dd>a <code>PhyloExpressionSet</code>.</dd>
<dt>conservation_test</dt>
<dd>a conservation test function (e.g. <code>stat_flatline_test</code>, <code>stat_reductive_hourglass_test</code>, etc.)</dd>
<dt>transforms</dt>
<dd>named list of transformation functions (default: <code>COUNT_TRANSFORMS</code>)</dd></dl>

Arguments

Author

Perform Permutation Tests Under Different Transformations — tf_stability

<dl>

<dt>phyex_set</dt>
<dd>a <code>PhyloExpressionSet</code>.</dd>


<dt>conservation_test</dt>
<dd>a conservation test function (e.g. <code>stat_flatline_test</code>, <code>stat_reductive_hourglass_test</code>, etc.)</dd>


<dt>transforms</dt>
<dd>named list of transformation functions (default: <code>COUNT_TRANSFORMS</code>)</dd>

</dl>

tf_stability: Perform Permutation Tests Under Different Transformations

Description

Usage

Value

Arguments

Author

Details

References