makeTxDbFromMyGene


A list, vector, or comma-separated string of query terms.


gene.list


Type of types of identifiers, either a list, vector, or a comma-separated fields to specify type of
input qterms, e.g. c("reporter", "ensembl.gene", "symbol")
refer to "http://mygene.info/doc/query_service.html#available_fields" for full list
of fields.


scopes

species


Logical, if TRUE, return list of genes without exons annotations. False by Default.


returnall


makeTxDbFromMyGene allows the user to make a TxDb object in the Genomic Features package from a mygene "exons" query using a default MyGene object. 


MyGene.Info_ provides simple-to-use REST web services
to query/retrieve gene annotation data. It's designed
with simplicity and performance emphasized. *mygene*,
is an easy-to-use R wrapper to access MyGene.Info_ services.

Adam Mark

mygene

Access MyGene.Info_ services

makeTxDbFromMyGene function

A list, vector, or comma-separated string of query terms.

Type of types of identifiers, either a list, vector, or a comma-separated fields to specify type of
input qterms, e.g. c("reporter", "ensembl.gene", "symbol")
refer to "http://mygene.info/doc/query_service.html#available_fields" for full list
of fields.

Logical, if TRUE, return list of genes without exons annotations. False by Default.

makeTxDbFromMyGene allows the user to make a TxDb object in the Genomic Features package from a mygene "exons" query using a default MyGene object.

makeTxDbFromMyGene: makeTxDbFromMyGene

Description

Usage

Arguments

Value

Details

See Also

Examples