myvariant.R

R client for MyVariant.info web services.

To install from your R console:

source("http://bioconductor.org/biocLite.R")
biocLite(c("httr", "jsonlite", "S4Vectors", "IRanges", "Hmisc", "plyr", "magrittr", "VariantAnnotation"))
library(devtools)
install_github("Network-of-BioThings/myvariant.R")

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Version

1.2.0

License

Artistic-2.0

Maintainer

Adam Mark

Last Published

February 15th, 2017

Functions in myvariant (1.2.0)

getVariants

Return the list of variant objects for the given list of HGVS ids.

getVariant

Return the variant object for the given HGVS id.

queryVariant

Return the query result.

formatSingleHgvs

Get Hgvs HGVS ID from chromosome, position, reference and alternate alleles.

MyVariant

metadata

queryVariants

Return the batch query result.

MyVariant-class

Class "MyVariant"

formatHgvs

Get all HGVS IDs from Vcf object.