mzipmed (version 1.4.0)

mzip: Marginalized Zero-Inflated Poisson Regression Model

Description

This function uses the MZIP model to allow you to fit counts variables with excess zeroes while allowing for easy interpretations. This function assumes that the outcome and covariates are all the same sample size without missing data. Covariates must be numerical, so binary predictors such as gender or race need to be dummy coded with zeroes and ones. For more information about this model and interpretations see Long, D Leann et al. "A marginalized zero-inflated Poisson regression model with overall exposure effects." Statistics in medicine vol. 33,29 (2014): 5151-65. doi:10.1002/sim.6293. Note: BFGS likelihood optimization was used for this R package. For more information on use of the offset argument see vignette.

Usage

mzip(y, pred, print = TRUE, offset = NULL)

Value

The function will return a list of results from the MZIP model. In the list G(Gamma) refers to the excess zero/logistic part of the model

and A(Alpha) refers to the Poisson/mean part of the model for example.

Gest are the gamma coefficients for the logistic part of the MZIP model.

Aest are the alpha coefficients for the Poisson part of the MZIP model.

_ModelSE are the standard errors for each coefficient in the model.

_RobustSE are the robust standard errors for each coefficient in the model.

_ModelUpper are the upper confidence limits for each coefficient.

_ModelLower are the lower confidence limits.

_RobustUpper are the upper confidence limits based on robust standard error.

_RobustLower are the lower confidence limits based on robust standard errors.

_ModelZ are the Z scores for each coefficient.

_RobustZ are the robust Z scores for each coefficient.

_ModelZpval are the p-values based on the Z scores for the model.

_RobustZpval are the p-values based on the robust z scores.

AlphaCov is the covariance matrix for the poisson coefficient estimates

Cov is the covariance matrix for the MZIP model

RobAlphaCov robust covariance matrix for the Poisson component of MZIP

RobCov robust covariance matrix

loglik is the log-likelihood of the MZIP model

AIC is the Akaike's Information Criterion of the MZIP Model

BIC is the Bayesian's Information Criterion of the MZIP Model

Arguments

y

is the outcome variable

pred

is a vector of covariates (use cbind for multiple)

print

if =TRUE will give model parameters estimates and overall mean relative risks. Default =TRUE

offset

is an optional variable to be used as an offset, no need to log-transform prior

Examples

    test=mzip(y=mzipmed_data$ziY1,pred=cbind(mzipmed_data$X,mzipmed_data$C1,
              mzipmed_data$C2),print=FALSE,offset=NULL)

   if (FALSE) {
   test= mzip(y=mzipmed_data$ziY1,pred=cbind(X=mzipmed_data$X,C1=mzipmed_data$C1,
              C2=mzipmed_data$C2),print=TRUE,offset=NULL)
              }