nCal (version 13.12-01)

plot.bcrm: Plot function for the bcrm object

Description

Plot function for the bcrm object

Usage

## S3 method for class 'bcrm':
plot(x, assay_id = NULL, add = FALSE, lcol = 1, main = NULL, fit.2 = NULL, 
    lwd = 0.1, points.only = FALSE, all.lines.only = FALSE, t = NULL, ylim = NULL, 
    same.ylim = FALSE, lty3 = NULL, fit.3 = NULL, lcol2 = NULL, lcol3 = NULL, xlab = NULL,
    ylab = NULL, col.outliers = TRUE, lty = 1, cex = 1, log = "x", ...)

Arguments

x

a bcrm object.

assay_id

a string. Assay identifier.

add

Boolean. If TRUE, adding to an existing plot.

lcol

integer. Line color.

main

string. Plot title.

fit.2

a bcrm object. A second fit object to be plotted together with x.

lwd

numeric. Line width.

points.only

Boolean. If TRUE, only the data points are plotted and not the fitted curves

all.lines.only

Boolean. If TRUE, only the fitted curves are plotted.

t

a numeric vector. The log concentrations.

ylim

a numeric vector. The usual ylim of plot function.

same.ylim

Boolean. If TRUE, all fitted curves are plotted with the same ylim.

lty3

integer. lty for plotting fit.3.

fit.3

bcrm object. A third optional bcrm object to be plotted.

lcol2

integer. Line color for plotting fit.2.

lcol3

integer. Line color for plotting fit.3.

xlab

string. The usual xlab argument of plot function.

ylab

string. The usual ylab argument of plot function.

col.outliers

Boolean. If TRUE, outliers are colored differently.

lty

integer. Line type for plotting x.

cex

numeric. The usual cex argument of plot function.

log

string. If it is "x", then the x axis is labeled on the scale of concentration; otherwise, it is labeled on the scale of log concentration.

...

Not passed to other functions, but needed to keep some similarity with plot.drm.