Pedigree, adapted from example 9.1 of Mrode (2005)
log-Likelihood Ratio Test
Sampling (co)variances
Confidence Intervals for Variance Components
Pedigree, adapted from Wray (1990)
Pedigree with genetic groups adapted from Quaas (1988) equation [5]
Pedigree, from chapter 3 of Mrode (2005) with genetic groups and a trait column
Pedigree from Table 2.1 of Mrode (2005)
Simulated dataset used to analyze data with genetic group animal models
Finds the double first cousins in a pedigree
Identifies the matriline or patriline to which each individual in a pedigree
belongs
Generation assignment
Function used in conjunction with others to produce a profile likelihood for
a variance component
Functions to conduct gene dropping through a pedigree
Akaike Information Criterion
Simulated design random effects
Genetic group contribution
Simulated genetic random effects
Creates the inverse additive genetic relationship matrix with genetic groups
Create the inverse (additive) mutational effects relationship matrix
Creates the inverse additive genetic relationship matrix
Creates the additive genetic relationship matrix for the shared sex
chromosomes
Creates the additive by dominance and dominance by dominance epistatic
genetic relationship matrices
Create the dominance genetic relationship matrix
Prepares a pedigree by sorting and adding 'founders'
Creates the additive by additive epistatic genetic relationship matrix
Approximate standard errors for linear functions of variance components
Creates the additive genetic relationship matrix
(Non)Additive Genetic Relatedness Matrices in Animal Model Analyses
Create the dominance genetic relationship matrix through an iterative
(simulation) process
Creates the (additive) mutational effects relationship matrix
Function used in the proLik function to produce a profile likelihood
for a variance component
REML convergence checks
Middle Class Neighborhood pedigree construction
Double first cousin pedigree construction
Half-sib pedigree construction
Genetic group pedigree and data simulation
Prunes a pedigree based on individuals with phenotypes
Profile Likelihoods
Pedigree and phenotypic values for a mythical population of Warcolaks
Integer Format Pedigree
Deprecated functions in package nadiv .
Creates components of the additive genetic relationship matrix and its inverse
Transforms ASReml-R gamma sampling variances to component scale
Converts a sparse matrix into a three column format.
Pedigree, adapted from Table 1 in Fernando & Grossman (1990)
Pedigree adapted from Fikse 2009 with genetic groups and fuzzy classification