nandb (version 0.2.1)

KmerArray: Get an image where each pixel represents a kmer.

Description

Based on a brightness image (array, can be more than two-dimensional), create a kmer image (array) where each pixel represents a kmer (0 for immobile, 1 for monomer, 2 for dimer and so on).

Usage

KmerArray(brightness.arr, monomer)

Arguments

brightness.arr

The brightness array.

monomer

The (median) brightness of a monomer.

Value

A matrix.

Examples

# NOT RUN {
img <- ReadImageData(system.file('extdata', '50.tif', package = 'nandb'))
brightness <- Brightness(img, tau = NA, mst = 'Huang', filt = 'median')
ka <- KmerArray(brightness, 1.1)

# }