nat.nblast (version 1.5)

WeightedNNBasedLinesetMatching: Compute point & tangent vector similarity score between two linesets

Description

WeightedNNBasedLinesetMatching will work with 2 objects of class dotprops or neuron. The code to calculate scores directly for neuron objects gives broadly comparable scores to that for dotprops objects, but has been lightly tested. Furthermore only objects in dotprops form were used in the constriction of the scoring matrices distributed in this package. It is therefore recommended to convert neuron objects to dotprops objects using the dotprops function.

Usage

WeightedNNBasedLinesetMatching(target, query, ...)
## S3 method for class 'dotprops':
WeightedNNBasedLinesetMatching(target, query,
  UseAlpha = FALSE, ...)
## S3 method for class 'neuron':
WeightedNNBasedLinesetMatching(target, query,
  UseAlpha = FALSE, OnlyClosestPoints = FALSE, ...)

Arguments

target,query

dotprops or neuron objects to compare (must be of the same class)

...

extra arguments to pass to the distance function.

UseAlpha

Whether to scale dot product of tangent vectors (default=F)

OnlyClosestPoints

Whether to restrict searches to the closest points in the target (default FALSE, only implemented for dotprops).

Value

• Value of NNDistFun passd to WeightedNNBasedLinesetMatching

Details

UseAlpha determines whether the alpha values (eig1-eig2)/sum(eig1:3) are passed on to WeightedNNBasedLinesetMatching. These will be used to scale the dot products of the direction vectors for nearest neighbour pairs.

See Also

dotprops